PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604127.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 707aa    MW: 79841.7 Da    PI: 8.6152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-1119931194
                    HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    + ++ l++p +f++++ +  + +s+   l +  s ++W++k+  ++++    l++GW+eF+ +n+L+ g +++ +++g++ f  +v
  XP_013604127.1 19 FHTH-LMIPEDFFSKYiE--EGRSMAAELISdASDKKWRLKM--TGRR----LGDGWREFAVDNNLRFGGVLLVRYEGDMVF--HV 93
                    4445.9**********52..567777777765999*******..8888....************************999888..54 PP
2B360.13.9e-19170259293
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f +l+++++l+++ l+lp + ++++g+   + ++++l d   rsW++ l+++k+s+++ +++GW++F+++ng + g f++Fkl+g++ +++v
  XP_013604127.1 170 FVALVTASSLRTDKLYLPQHITSSNGLTR-KCRKIVLVDGGERSWTLDLSFNKSSDTFCMSRGWRNFCEENGQEPGGFFMFKLVGNR-ETPV 259
                     5679999******************9985.557**************************************************9963.3344 PP
3B3491.1e-15348432999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ ++ l+lp  f++e+g++k++  ++ l  ++g +W   l   + +g++ l+kGWk+Fvkang+++g ++ ++  + +++++v+ ++++
  XP_013604127.1 348 YATHHHTLSLPALFVRENGINKPG--EIHLLGKDGTKWPTSLL-VNIRGSMSLGKGWKDFVKANGVESGFTLKLM--W-EDTTPVFCLCSA 432
                     678899*************99766..8***************5.55666789*****************998888..7.788899999985 PP
4B361.41.5e-19492579191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f++ ++++  + ++rlvlp +fa+e++++k   +++ l  ++gr+W  k+ ++ k+gr+ l+kGWk+Fv+an+ k+gD++  +l+++++++
  XP_013604127.1 492 FVTLTITPCCFITCRLVLPAQFARENSLNKL--RMIYLLGRDGRKWLTKI-HQDKKGRMSLGKGWKDFVEANNFKSGDSFAMELIWEDGTR 579
                     5666677777889**************9965..59***************.677777899*************************964432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-158101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505899IPR003340B3 DNA binding domain
CDDcd100172.02E-11994No hitNo description
SuperFamilySSF1019362.75E-159103IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-191199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-20162262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-20164267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916169268IPR003340B3 DNA binding domain
CDDcd100172.12E-16169262No hitNo description
PfamPF023621.2E-17170260IPR003340B3 DNA binding domain
SMARTSM010191.1E-22170266IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-16338434IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-16339430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617340433IPR003340B3 DNA binding domain
SMARTSM010193.1E-20341433IPR003340B3 DNA binding domain
CDDcd100171.24E-14343431No hitNo description
PfamPF023622.1E-14347432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-21486590IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-18492582IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-18492580IPR003340B3 DNA binding domain
CDDcd100174.42E-17492583No hitNo description
SMARTSM010191.6E-26492587IPR003340B3 DNA binding domain
PROSITE profilePS5086314.96492587IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-7607667IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-9610696IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-8614699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MAKSRLLRPQ FFHTLVPGFH THLMIPEDFF SKYIEEGRSM AAELISDASD KKWRLKMTGR  60
RLGDGWREFA VDNNLRFGGV LLVRYEGDMV FHVSNLGQNC CEIQDISPPC NKFVKSDKTL  120
LKKRLHPRTQ VDRCDEDEDG IELPRNKKTE MRSPEAEAEP LSSSSDNSCF VALVTASSLR  180
TDKLYLPQHI TSSNGLTRKC RKIVLVDGGE RSWTLDLSFN KSSDTFCMSR GWRNFCEENG  240
QEPGGFFMFK LVGNRETPVL SLGLTESNND TRVCSQASER ESLSTELSSE DEYIQGESSE  300
DDCSSMESLM ETGKKKCSPK RRVTSYASYS SYLPYYKRYV TFTLRHGYAT HHHTLSLPAL  360
FVRENGINKP GEIHLLGKDG TKWPTSLLVN IRGSMSLGKG WKDFVKANGV ESGFTLKLMW  420
EDTTPVFCLC SADSTSDREQ EEYFKAIRKQ SLFMDPSNIE NSSKDEKNKE ENMSWERKKR  480
GRGSTPLSLK QFVTLTITPC CFITCRLVLP AQFARENSLN KLRMIYLLGR DGRKWLTKIH  540
QDKKGRMSLG KGWKDFVEAN NFKSGDSFAM ELIWEDGTRM LRLSGAESSS SKAYVSTEAG  600
SSSDSSSSAI QNRSVTLTLT PEEVRACKLH LPSEFMKANG INRLGKITLL GANKMEWSAY  660
LLTRDGTVAN GVSLGESFTL EFSKEQNRTT PVLKFCSLET NKKVGKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604127.10.0PREDICTED: B3 domain-containing protein REM13-like isoform X3
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A0D3DVL70.0A0A0D3DVL7_BRAOL; Uncharacterized protein
STRINGBo8g099680.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-168DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]