PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 182aa MW: 20412.8 Da PI: 9.3929 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.4 | 1.6e-13 | 78 | 163 | 13 | 98 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++d k ++P+ ri++il++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d v + XP_013604077.1 78 VEDAKMIRFPMNRIRRILRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLADCVRE 163 6789999***************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.8E-18 | 84 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.5E-21 | 85 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.6E-23 | 86 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVSSKKPNQE KKPRSDGVNK AGGGNTRSSG SKPKKKNTNV QANAKKEPEV HEISESSSSD 60 SAGEARRDEP VKSNGGGVED AKMIRFPMNR IRRILRSDNS APQIMQDAVF LVNKATELFI 120 ERFSEEAYES SVQDKKKFIH YKHLSSVVSN DERYEFLADC VREKLKADVA MEEWERSMTD 180 AG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797148 | 0.0 | KC797148.1 Brassica napus transcription factor subunit NF-YC10C (NF-YC10C) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604077.1 | 1e-132 | PREDICTED: DNA polymerase epsilon subunit 4-like | ||||
TrEMBL | A0A078GBI3 | 1e-131 | A0A078GBI3_BRANA; BnaC08g43430D protein | ||||
TrEMBL | A0A0D3DYH6 | 1e-131 | A0A0D3DYH6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FMJ5 | 1e-131 | A0A3P6FMJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g112740.1 | 1e-132 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 7e-70 | nuclear factor Y, subunit C10 |