PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603970.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 297aa    MW: 34082.7 Da    PI: 6.7501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31130188159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v++s+fprsYYrCt + C+vkk+vers +d+++v++tY g+H+h+
  XP_013603970.1 130 LDDGYKWRKYGQKPVRNSPFPRSYYRCTISCCNVKKRVERSFTDQSCVITTYIGQHTHP 188
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-31116190IPR003657WRKY domain
PROSITE profilePS5081129.057125190IPR003657WRKY domain
SuperFamilySSF1182904.71E-27126190IPR003657WRKY domain
SMARTSM007741.0E-34130189IPR003657WRKY domain
PfamPF031067.7E-24131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEKTGAGMAF SNLGQTRVDP SLSDSSWERY PVGFMELLGV HHQDSSRYAL SHIPPMQLTA  60
TPNPSSPISY ALCEAVTGEE NNRYYQEHED DEEEQKHKRN KRFKSTRSSE QTKMKAPRVS  120
FITKSLVNNL DDGYKWRKYG QKPVRNSPFP RSYYRCTISC CNVKKRVERS FTDQSCVITT  180
YIGQHTHPRP LILSRQGSFG SDGPASESYF DVTPTLPSQL HQPFDYNNHH QHQSQGLYLF  240
GTEYLSRQEK ELNHDDEYDD HLIKTSRTQD LLDGAGLVKD NGLLQDVVPA HIINEEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-221231901077Probable WRKY transcription factor 4
2lex_A5e-221231901077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-159AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603970.10.0PREDICTED: probable WRKY transcription factor 68
RefseqXP_022563689.10.0probable WRKY transcription factor 68
SwissprotQ93WV66e-94WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A0D3DV270.0A0A0D3DV27_BRAOL; Uncharacterized protein
STRINGBo8g097780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.19e-95WRKY family protein