PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603948.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 403aa    MW: 45697.2 Da    PI: 6.5689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52241501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLp k++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+
  XP_013603948.1  24 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLP-KFATGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 116
                     579***************************.89***************.777899***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykgra kg+ktdW+mhe+r+
  XP_013603948.1 117 eGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRM 150
                     56667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5820182IPR003441NAC domain
PROSITE profilePS5100557.124182IPR003441NAC domain
PfamPF023651.6E-2526150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAADPSGKME ERNNDGDQKM EEVLLPGFRF HPTDEELVSF YLKRKVQHNP LSIELIRQLD  60
IYKYDPWDLP KFATGEKEWY FYCPRDRKYR NSSRPNRVTG AGFWKATGTD RPIYSSEGNK  120
CIGLKKSLVF YKGRAAKGVK TDWMMHEFRM PSLSVPSPST KRFFDSPVSP NDSWAICRIF  180
KKTNTTTLRA MPHSFVSSLP SETSIDTMSS DQKLSNTSHF SSDKILKTSS HFQFHHENMS  240
STPKTSTSPT SHVATINPFS YLDFTSYEET TNVFNPVSCL DHQHLTNLFL ATQETQPQFP  300
RLASPNESPS FLVNMSSSDC ALLGECTSQI DLSVMLAQEQ CPALVSLPQE YQEKGLEGNG  360
EIKNLGGCNE DYHYQDVKHN MTLLESYYSS LSNGELANCF STT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-542418617169NO APICAL MERISTEM PROTEIN
1ut4_B3e-542418617169NO APICAL MERISTEM PROTEIN
1ut7_A3e-542418617169NO APICAL MERISTEM PROTEIN
1ut7_B3e-542418617169NO APICAL MERISTEM PROTEIN
3swm_A3e-542418620172NAC domain-containing protein 19
3swm_B3e-542418620172NAC domain-containing protein 19
3swm_C3e-542418620172NAC domain-containing protein 19
3swm_D3e-542418620172NAC domain-containing protein 19
3swp_A3e-542418620172NAC domain-containing protein 19
3swp_B3e-542418620172NAC domain-containing protein 19
3swp_C3e-542418620172NAC domain-containing protein 19
3swp_D3e-542418620172NAC domain-containing protein 19
4dul_A3e-542418617169NAC domain-containing protein 19
4dul_B3e-542418617169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603948.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893850.0AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603948.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLA0A078JFQ00.0A0A078JFQ0_BRANA; BnaCnng46350D protein
TrEMBLA0A0D3DR820.0A0A0D3DR82_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FW460.0A0A3P6FW46_BRAOL; Uncharacterized protein
STRINGBo8g076410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]