PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603866.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 279aa    MW: 31964.6 Da    PI: 6.793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19135185256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  XP_013603866.1 135 LYRGVRQRQ-WGKWVAEIRKPKS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 185
                     59****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-34134194No hitNo description
PROSITE profilePS5103223.644135192IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-23135193IPR016177DNA-binding domain
SMARTSM003803.0E-37135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-32135194IPR001471AP2/ERF domain
PfamPF008472.6E-13136185IPR001471AP2/ERF domain
PRINTSPR003672.5E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.5E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDFDEELNLC TTKGKNIDPS CGEGSSTTSP RSMKKMRNLD HRPKPYFSFS SSSSSNSLGA  60
FPFHLDPTFQ NQQLGYVPVN QQHDQKQMIS FSPQQPQQQY MFKYWSDTLN LSPRGRRMMM  120
MNQESIVQPY SATKLYRGVR QRQWGKWVAE IRKPKSRARL WLGTFDTAEE AAMAYDRQAF  180
KLRGHNATLN FPEHYVNTEV EVHDSSSLDQ KQTQTQQPNE VNLENKEVAV SDGGLEEGMA  240
EAWFNAVRAG WGPESPLWDD LDSSQFSQSS SSCPMKPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13343KKMRNLDHRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603866.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
RefseqXP_013708236.10.0ethylene-responsive transcription factor ERF054
SwissprotQ9M0J31e-138ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A0D3DN920.0A0A0D3DN92_BRAOL; Uncharacterized protein
STRINGBo8g054130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-134ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]