PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28347 Da PI: 8.4725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++lv ++ ++G g+W+ ++++ g+ R++k+c++r ++yl XP_013603850.1 14 RGKWSEEEDQKLVAYIDEYGIGDWRFVPHRTGLLRCGKSCRLRRLNYL 61 89******************************99*********99997 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+ E++ +v+ + +G++ W+ Ia++m+ gR+++++k++w++ XP_013603850.1 67 KGKLTPREEQDIVNFHSVFGNR-WAVIAQYMP-GRSDNNIKNHWNSC 111 6889******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.274 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-26 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-18 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.61E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.304 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-7 | 71 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGGATWFEAD GTKRGKWSEE EDQKLVAYID EYGIGDWRFV PHRTGLLRCG KSCRLRRLNY 60 LRPEVKKGKL TPREEQDIVN FHSVFGNRWA VIAQYMPGRS DNNIKNHWNS CLKKRLKRNG 120 IDPMTHQPII NLAVKTPSFN TDCGSSSSLT ASPSSSSSSL SGSARLLNKI ATSISSRQQG 180 VERIKDIMSD PRITCINGQA KELEESKKDH GKILASSDDQ EDDFLMWDEE KVRRFMEEIG 240 VMDLETNGVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603850.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
TrEMBL | A0A0D3DTQ5 | 0.0 | A0A0D3DTQ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g091080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 4e-78 | myb domain protein 47 |