PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603812.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 226aa    MW: 25449.4 Da    PI: 10.5063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08138178954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_013603812.1 138 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 178
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6139178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-6152183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDNSDILMNM MMTQMGKLPD HFSNPIPNPS SHNIMMPSES NTYHPFFFNH NNHIHPPVLN  60
PTITLHHQPG LNFRYAPSTS SFIPDKRRGG GDNADMAAMR EMIFRIAVMQ PIHIDPESVK  120
PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK  180
QVQSMEEHAV VNGGGMTPAP LVVGGKGCGS MRSDHHQMLG NAHILR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603812.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603812.11e-167PREDICTED: transcription factor HEC2-like
RefseqXP_013675288.11e-167transcription factor HEC2
SwissprotQ9SND41e-101HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A078FTA11e-165A0A078FTA1_BRANA; BnaC08g21730D protein
TrEMBLA0A0D3DRW31e-165A0A0D3DRW3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGF01e-165A0A3P6FGF0_BRAOL; Uncharacterized protein
STRINGBo8g079710.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]