PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 372aa MW: 41279.2 Da PI: 10.187 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.4e-10 | 243 | 301 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r+ NR +A rs R ++i++Le kv++L+ e ++L l +l+ l++++ XP_013603790.1 243 KRVKRMLANRASAARSKDRETKYIAQLEHKVQTLQIETTTLSAHLTHLQRDNMGLQNQN 301 999********************************************998877777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-12 | 239 | 303 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-9 | 241 | 302 | No hit | No description |
PROSITE profile | PS50217 | 10.151 | 241 | 304 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.1E-9 | 243 | 301 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.26E-10 | 243 | 299 | No hit | No description |
CDD | cd14703 | 3.34E-17 | 244 | 295 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MQRPNSSSSS LNPSPIRFPV PFTGNRVGAP PPPPIPPTFQ PKHSFPAAAV EERTGAGFSP 60 SLPPSPFTMY HSTSRVVAGG SGNLPPRKTS HRRSNSDHTF VFSSMSPSKS LERPVSGCGE 120 VSDWSKLVKE EERRTLSEGY DDALRAYMRL DQIDAESSRG RTRKMTNGGS TSGDSEGESN 180 VKRRAGGDIS PTSRHYRSVS VDSCCFREGA YSVGFGKYEF SAADMKKIAA DEKLAGIVMA 240 DPKRVKRMLA NRASAARSKD RETKYIAQLE HKVQTLQIET TTLSAHLTHL QRDNMGLQNQ 300 NSELKFRLQS MEQQTQLRNA LSEKLTEEVQ RLRLVIGVPN RSESNISNAS LTPEMFQQQL 360 RISQLQHPHY NE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189480 | 0.0 | AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603790.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
TrEMBL | A0A0D3DW91 | 0.0 | A0A0D3DW91_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g101920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20354 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 1e-125 | bZIP family protein |