PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013603752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 186aa MW: 21996.8 Da PI: 7.7895 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.5 | 6.8e-09 | 75 | 127 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r +rk +NRe+A+rsR +K++ +ee +L+ eN++L +++ ++ + XP_013603752.1 75 RRKKRKLSNRESAKRSRVKKQKHLEEMNIQLNQLKIENRELENQIRYVLQHFQ 127 799***********************************999988876655555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-9 | 69 | 122 | No hit | No description |
SMART | SM00338 | 2.1E-10 | 71 | 135 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 9.9E-7 | 72 | 120 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.932 | 73 | 136 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.63E-9 | 75 | 125 | No hit | No description |
CDD | cd14702 | 9.03E-18 | 76 | 127 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 78 | 93 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MMSTIHPVLS CEPGQTTHVP AFETGFTPWD NSHLFSVFDS SMNIIPHSVH EYLSPDSVNR 60 SGPDVVPTDS YTDERRKKRK LSNRESAKRS RVKKQKHLEE MNIQLNQLKI ENRELENQIR 120 YVLQHFQRTE TENNRLRLEQ RLLHSMVLNI RQVLMLHQID RSSDYVTWPY DNNTRVTVQH 180 DPVCDF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 80 | ERRKKRKL |
2 | 74 | 95 | RRKKRKLSNRESAKRSRVKKQK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013603752.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603752.1 | 1e-137 | PREDICTED: ocs element-binding factor 1 | ||||
TrEMBL | A0A0D3DRP4 | 1e-136 | A0A0D3DRP4_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g079020.1 | 1e-137 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49760.1 | 1e-62 | basic leucine-zipper 5 |