PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013603751.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 376aa MW: 43262.5 Da PI: 6.5497

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013603751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.8	5.9e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk XP_013603751.1 9 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53 6889****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.838	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.76E-28	2	82	No hit	No description
PRINTS	PR00404	6.7E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-20	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE 60 HSCIEDVISK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSNQ 120 VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YTKNQLLPLD 180 CTTTQFHSGI QLPLAMEGNK SMQEAHSMSW LPNNDNQETI LPGESSFLPH REMEGVNPIY 240 SNGFFESVKQ EDQMCSNQGQ QFEQLEQQGH GCLGLQQIGE EFSYPTSFGT TLGMDEDQEK 300 KIKSEMELNN LQQQQQQQQQ DPSSMYNPTA NNGGCFQNPH DQSMFGTDHH HYHYQHHQNW 360 VPGSMFGQAS YNQQPN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE  60
HSCIEDVISK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSNQ  120
VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YTKNQLLPLD  180
CTTTQFHSGI QLPLAMEGNK SMQEAHSMSW LPNNDNQETI LPGESSFLPH REMEGVNPIY  240
SNGFFESVKQ EDQMCSNQGQ QFEQLEQQGH GCLGLQQIGE EFSYPTSFGT TLGMDEDQEK  300
KIKSEMELNN LQQQQQQQQQ DPSSMYNPTA NNGGCFQNPH DQSMFGTDHH HYHYQHHQNW  360
VPGSMFGQAS YNQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	8e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	8e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	8e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	8e-14	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013603751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603751.1	0.0	PREDICTED: MADS-box protein SOC1
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A0D3DQ92	0.0	A0A0D3DQ92_BRAOL; Uncharacterized protein
STRING	Bo8g068060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]