PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603748.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 267aa    MW: 29568.3 Da    PI: 6.9855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-07555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++ WT+ E   l  +v+ +G g W+ I +        k R+  ++k++w++
   XP_013603748.1  5 KQMWTPKEVTALRAGVRAYGIGKWRGILSDSKfgralKARSNVDLKDKWRN 55
                     678**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-13362IPR009057Homeodomain-like
PROSITE profilePS500906.679457IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-12456IPR009057Homeodomain-like
CDDcd116603.36E-15656No hitNo description
SuperFamilySSF467853.48E-5100173IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGGRKQMWTP KEVTALRAGV RAYGIGKWRG ILSDSKFGRA LKARSNVDLK DKWRNISAAT  60
FGSRKKKVLA IVAVANDNDG EQEIVPASPA NGDNEGLFAS VDTFILEAIT SWNKLLRPNK  120
KSILHHVEEK NNMQPDKKWL VASRLEHLVN VGTIIKKNNR YKISPTYAAA EAEQSSTQLL  180
LEGNKENGVV NHTKSQVDGE AFKINGMTEE EASAAAAIAL EEAEYARAEA EEAAREADRA  240
EAEAEAMQDY AEAVKEVWKN WMPSQTW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603747.10.0PREDICTED: telomere repeat-binding factor 3-like isoform X1
RefseqXP_013752321.20.0telomere repeat-binding factor 3-like
SwissprotQ9M2X33e-61TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A0D3DRQ60.0A0A0D3DRQ6_BRAOL; Uncharacterized protein
STRINGBo8g079140.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-62telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]