PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013603746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 23401 Da PI: 10.0028 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.1 | 3.8e-35 | 29 | 120 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++l+++l+ k+ XP_013603746.1 29 ACASCKHQRKKCNNECILSPYFPARKSKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRLSEELKLYKS 120 7*************************************************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.99 | 28 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-33 | 29 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MKERQEGDDM MQRNSNNSNI SHNSPPHQAC ASCKHQRKKC NNECILSPYF PARKSKEFQA 60 VHKVFGVSNV QKMVRTVREE DRTKLSESLT WEALWRQKDP VLGSYGEYRR LSEELKLYKS 120 LVHNQPLVTW NDSNNQQRVF NNSNNNKNGL AVNSSGFGGF SVVNNNGVGV NREIINGGNT 180 SRNLQGGWGN LKQDQRQQCY AVINGV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-18 | 30 | 115 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-18 | 30 | 115 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013603746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603746.1 | 1e-152 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9LNB9 | 1e-104 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A3P6G1H4 | 1e-140 | A0A3P6G1H4_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g114670.1 | 1e-122 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-86 | LOB domain-containing protein 2 |