PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013603629.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 241aa MW: 27329.4 Da PI: 9.1479

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013603629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.7e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl+WtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR XP_013603629.1 24 PRLKWTPELHQNFVHAVDMLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.423	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-29	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-15	24	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-22	24	76	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-9	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRCGRSSDG GISGVRPYVR SPVPRLKWTP ELHQNFVHAV DMLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGYKP TLLGRSESSS SSRRRRQDNE DHFYDNLSEH ARNDCLLGFH 120 SFNFRGRTSA DNDDDDFLNT MSMERTKTFA GIGESNKFQS NHFLEVQRTK NIWVNKEEEE 180 DLTLSLSLNH PHNSQKRWRS NTSSSLSETS EAVSSAFISR DCFASSKIDL NLNLSFSSSS 240 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-19	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013603629.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630486	1e-144	AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603629.1	1e-180	PREDICTED: putative Myb family transcription factor At1g14600
Swissprot	Q700D9	1e-113	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A0D3DXC0	1e-178	A0A0D3DXC0_BRAOL; Uncharacterized protein
STRING	Bo8g106700.1	1e-179	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-101	G2-like family protein