 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013603556.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GRAS |
| Protein Properties |
Length: 418aa MW: 46950.7 Da PI: 5.6244 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013603556.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 318.9 | 1.1e-97 | 30 | 415 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilk 92
++lLl+cA+a++s+d++l+++lL+ l+++aspdg +++qRl++ f++AL +r +++ ++l++++ ++ +++ ++++++++++l f +++P+++
XP_013603556.1 30 EQLLLHCATAIDSNDAALVHQLLWVLNNIASPDGdSSTQRLTSAFVRALLSRAVSKIPTLFSTFgNTVFQPPADEIHRFSVVELagFIDLTPWHR 124
79********************************779***************************877778888899999999999********** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
f++++aN+aIl aveg +vHi+D+++++++Q p+L++a+a++ ++p l++T+v+s++++ + ++ee+g++L +fA++ +++++f+++
XP_013603556.1 125 FGFIAANEAILTAVEGYAKVHIVDLSLTHCMQIPTLIDAIATKLNKPLLLKLTVVSSASNFppfINISYEELGSKLVNFATSRNIEMQFTIIpst 219
*********************************************************99999999**************************9886 PP
GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+++ +++l l++Lr+ p +Eal+Vn++++l +++de+++ +s r+ +L++++sl+P++v+++e++ad++s ++++r+++a++y++ f
XP_013603556.1 220 YSDGFSSL-LQHLRMYPtsyNEALVVNCHMMLRYIPDETLTPSSpsslsLRNVFLNQLRSLNPTMVTLIEEDADLTSDNLVTRLSSAFNYFWIPF 313
66777777.99999999999****************9998777666666899******************************************* PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
d++++ + se+r+ +E+e ++++i+nvva+eg er+er+et+++W er+++ F+ v+++e+a+++ k++l +++ ++g++ +++++slvl+W
XP_013603556.1 314 DTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDNEFGGVRVREEAVSELKAMLGEHAvGWGMKKDDDDESLVLTW 404
******7...9*********.************************************************************************** PP
GRAS 363 kdrpLvsvSaW 373
k++++v++++W
XP_013603556.1 405 KGHSVVFATVW 415
*********** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MTRTRIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALVHQ LLWVLNNIAS 60
PDGDSSTQRL TSAFVRALLS RAVSKIPTLF STFGNTVFQP PADEIHRFSV VELAGFIDLT 120
PWHRFGFIAA NEAILTAVEG YAKVHIVDLS LTHCMQIPTL IDAIATKLNK PLLLKLTVVS 180
SASNFPPFIN ISYEELGSKL VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE 240
ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSDNLVT 300
RLSSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM 360
RDNEFGGVRV REEAVSELKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPI
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
