PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20739.2 Da PI: 6.9368 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 5 | 51 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 ++++GVr+++ +g+WvAeIr+p +r++lg+f taeeAa+a+++a+ XP_013603431.1 5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAV 51 59*******9.**********8.....334*********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.06E-33 | 5 | 63 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 6 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 6 | 50 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLISGRNANT 60 NFPLKNNSTI DTSESKTDTS ASASSSLSSI LSAKLRKCCK SSSPSLTCLR LDTTSSHIGV 120 WQKRAGSKSD SSWVMTVELG PAGPSHEPTR KASLDDVGLA TEVGGGEEEG TMDEEEKVAL 180 QMIEELLNTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-18 | 2 | 68 | 1 | 68 | ATERF1 |
3gcc_A | 7e-18 | 2 | 68 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in sepals of very young closed buds. Later, expressed in sepals and petals veins and epidermis, as well as in developing gynoecium but not in stamens. At anthesis, confined to the gynoecium, commenced in the anther, and slightly expressed in the anther filament. When petals and sepals withered, strong expression at the bottom of the silique, in the abscission zone, and in the pedicel region below it. At silique maturity, detected in the same region but only at the nectaries. {ECO:0000269|PubMed:15319479}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs, mostly in flowers, and in roots. Also observed at the branch points of pedicels of most young flowers, and in a patchy pattern in roots of mature plants and very young leaves in the rosette, including support cells of their trichomes. {ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603431.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ166624 | 1e-152 | DQ166624.1 Brassica carinata AP2 transcription factor (SHN1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603430.1 | 1e-138 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Refseq | XP_013603431.1 | 1e-138 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 5e-99 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0D3DX60 | 1e-136 | A0A0D3DX60_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g106100.1 | 1e-137 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 6e-72 | ERF family protein |