PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25910.5 Da PI: 4.6047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 81 | 130 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + k r++lg+f+taeeAa a+++a+ +l+g XP_013603390.1 81 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 130 9*******.**********32..2.24***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.985 | 80 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-37 | 80 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 80 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 81 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 81 | 140 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.38E-29 | 81 | 140 | No hit | No description |
PRINTS | PR00367 | 3.5E-11 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009861 | Biological Process | jasmonic acid and ethylene-dependent systemic resistance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEYQTSFFYE NQAQEFSPEN SCSTNSWSSQ ESFLWEESFL HDQSFSPSYY SNDFMAFGSS 60 LIKEEEGEDT VAALEEEERS YRGVRKRPWG KYAAEIRDST RKGIRVWLGT FDTAEEAALA 120 YDQAAFALKG DLAVLNFPVD VVRDSLQRME DVNFDNGESP VIALKRKHSM RNRPRGKKKS 180 YPSSSSSSSS SSKSRIQSVA MKQESTTTVV VFEDLGAEYL EELMRSCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 65 | 138 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269|PubMed:18467450}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00023 | PBM | Transfer from AT1G06160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU921649 | 3e-98 | EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603390.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q9LND1 | 2e-81 | ERF94_ARATH; Ethylene-responsive transcription factor ERF094 | ||||
TrEMBL | A0A0D3DYS4 | 1e-167 | A0A0D3DYS4_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g114710.1 | 1e-168 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06160.1 | 9e-75 | octadecanoid-responsive Arabidopsis AP2/ERF 59 |