PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18278 Da PI: 8.594 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.7 | 4.2e-43 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkC+k Cv+apyfpa++p kfa+vhk+FGasnv k+l+ l+e++r+da++slvyeA+ar++dPvyG+vg+i++l++qle+l+++la XP_013603353.1 14 PCAGCKLLRRKCVKICVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQVLSENHRSDAVNSLVYEANARVQDPVYGCVGTISSLHRQLETLQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 +++e XP_013603353.1 109 IAQAE 113 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.935 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-41 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MRQKGHRHGE AVSPCAGCKL LRRKCVKICV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ 60 VLSENHRSDA VNSLVYEANA RVQDPVYGCV GTISSLHRQL ETLQTQLAIA QAELVHMKTL 120 HHVDTRSSPY MASSITFPAI KDFSSDDNMA FMYDNGAGES LWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 11 | 115 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 11 | 115 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. At the bases of lateral organs formed from vegetative, inflorescence, and floral meristems. {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:17485849}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603353.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603353.1 | 1e-123 | PREDICTED: LOB domain-containing protein 3-like | ||||
Swissprot | Q9SA51 | 7e-98 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | A0A0D3DWZ5 | 1e-121 | A0A0D3DWZ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g105450.1 | 1e-122 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 1e-100 | ASYMMETRIC LEAVES 2-like 9 |
Publications ? help Back to Top | |||
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