PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603295.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 347aa    MW: 39209.8 Da    PI: 6.9476
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31181236156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_013603295.1 181 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 236
                     79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.395178238IPR017930Myb domain
SuperFamilySSF466895.12E-17180239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27180239IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-29181236IPR006447Myb domain, plants
PfamPF002494.6E-6183234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016036Biological Processcellular response to phosphate starvation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0080022Biological Processprimary root development
GO:1901699Biological Processcellular response to nitrogen compound
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIKKLSNMDY KQKQERCGQY IEALEEEQRK IHVFQRELPL CLDLVTQAIE ACKRELSGTA  60
TENMYGQSEC SEQTTGECRP VLEQFLTIKD SSTSNEEEEE LDDEHGNHDP DNDSEDKNMK  120
SDWLKSVQLW NQPDPLLPKE EGTQEKMVDR VVKKDESMKK EAMANGGERR KREAEKDGGR  180
KQRRCWSSQL HRRFLNALQH LGGPHVATPK QIKELMKVDG LTNDEVKSHL QKYRLHTRRP  240
SQTVPNNGNS QTQHLVVVEG IWVPKSDHST GRTTGGATTS GTTTRSTTGI YGAMAAPPLP  300
QWPSHSNFRP SIIVEEKGSG SPSEEVVVRC SSPAMSSSTR NHYVKNI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the root hair region and root hair cells. {ECO:0000269|PubMed:19341407}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00140DAPTransfer from AT1G13300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603295.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603295.10.0PREDICTED: uncharacterized protein LOC106310613
SwissprotQ9FX670.0HRS1_ARATH; Transcription factor HRS1
TrEMBLA0A0D3DPH40.0A0A0D3DPH4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FUC70.0A0A3P6FUC7_BRAOL; Uncharacterized protein
STRINGBo8g065380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.10.0G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]