PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38911 Da PI: 8.2897 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_013603204.1 14 KGLWSPEEDEKLLNHITHHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 4e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE+ l+v+++ lG++ W+ Ia++++ gRt++++k+ w+ XP_013603204.1 67 RGAFSPEEENLIVELHSVLGNR-WSQIASRLP-GRTDNEIKNLWN 109 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.376 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.87E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.809 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.87E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRHSCCXKQ KLRKGLWSPE EDEKLLNHIT HHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SPEEENLIVE LHSVLGNRWS QIASRLPGRT DNEIKNLWNS SIKKKLKQRG 120 IDPNTHKPIS EVDKDKPTRS SNNDHKSPSS SAATNQDFFL ERPSDFSDYF GFQKLNFNSN 180 LTPESSLCSM VPGQFSLGNM VGSVFQTPVC VKPSISLPPD NSSSTVSRGD HTASNWEFQT 240 NNTSNFFENS GFSWSIPSSS VTKPNPNFEE VKWSEYLNTP FFNGSTVQSQ SSQQIYIKSE 300 GEYLAKVSNI TDPWSQSQNE NLSTPEASDV FSKDLQRMAV SFGQSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 2e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603204.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189331 | 0.0 | AC189331.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037O12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603204.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription repressor MYB6 | ||||
Swissprot | Q8VZQ2 | 0.0 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A3P6FD71 | 0.0 | A0A3P6FD71_BRAOL; Uncharacterized protein | ||||
STRING | Bra030783.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 0.0 | myb domain protein 61 |
Publications ? help Back to Top | |||
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