PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603089.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 305aa    MW: 32927.5 Da    PI: 6.5779
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29139191255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +rl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_013603089.1 139 ARLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 191
                     79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.54133194IPR017930Myb domain
SuperFamilySSF466893.4E-19135195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-29137196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23139191IPR006447Myb domain, plants
PfamPF002495.2E-8141190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGEEVRMKDV SGDGDRVMEW EKGLPSDEDL ATLSYSLVPW NLAMAFSITP EKSRTIQDVN  60
RASETTFSSL RGGSSGPNTS SSTNLGVAAE EEDRVGSSSP GSDSKKQKIS EDSAGVDIST  120
AEEGDSGTED LNGKTLKRAR LVWTPQLHKR FVDVVAHLGI KNAVPKTIMQ LMNVEGLTRE  180
NVASHLQKYR LYLKRMQGLT LEGPSSSDKL FSSTPVPPQS FQDLGSGQGS GSAGHVGVPS  240
MMQMPVYAHH MGMQGYHHQN HAHDPYHQNH HRGSGGPANP YMMQQNKFGS MASYPPVGGG  300
SANEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-34138194157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603089.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603089.10.0PREDICTED: transcription factor LUX-like
RefseqXP_013671998.10.0transcription factor LUX-like
SwissprotQ9SNB41e-173PCL1_ARATH; Transcription factor LUX
TrEMBLA0A0D3A8V00.0A0A0D3A8V0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FEQ70.0A0A3P6FEQ7_BRAOL; Uncharacterized protein
STRINGBo1g070860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-165G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]