PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603026.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 208aa    MW: 23223.4 Da    PI: 4.5969
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-42321311100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++slvyeAear+rdPvyG++g i +lq+q+++l+aela
  XP_013603026.1  32 PCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVFGASNIIKLLQELPESQRTDAVKSLVYEAEARIRDPVYGSAGAIYNLQRQVSELQAELA 126
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     +++ e
  XP_013603026.1 127 KAQVE 131
                     99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.41731132IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-4232129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLDMETKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK  60
FSIAHRVFGA SNIIKLLQEL PESQRTDAVK SLVYEAEARI RDPVYGSAGA IYNLQRQVSE  120
LQAELAKAQV EIVSMQFQRS NLLELINNMD QPNQDQHKMM AFESSLGNCE HDEFISSSDE  180
ESNDFGFLED KYFNTNSLML WCDPLLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-423113310112LOB family transfactor Ramosa2.1
5ly0_B2e-423113310112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603026.11e-155PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR08e-93LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0D3DYI01e-153A0A0D3DYI0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMJ11e-153A0A3P6FMJ1_BRAOL; Uncharacterized protein
STRINGBo8g112780.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-94LOB domain-containing protein 1