PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602837.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 320aa    MW: 36257.1 Da    PI: 8.3723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05212234123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk+F++   L  H  +H
  XP_013602837.1 212 YTCETCGKVFKSYQALGGHRASH 234
                     9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355472850IPR015880Zinc finger, C2H2-like
PfamPF139120.00113351IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-8211279No hitNo description
PROSITE profilePS5015711.24212239IPR007087Zinc finger, C2H2
PfamPF139124.9E-11212236IPR007087Zinc finger, C2H2
SMARTSM003550.011212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
PfamPF139125.6E-12257279IPR007087Zinc finger, C2H2
SMARTSM003550.23257279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058257279IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLVDSTSLYF FFLLFLLLLS LLLKMESYKR KFCFKSFVNG RALGGHMRSH MPTLHKFSIQ  60
EEEERPSQLG DESKSDVSSS EEGQEQKISG SREEKHPTMD DDGSETESSR DIVNLKRKRS  120
KRTRKLDSFA SKKMKTSQLG YKNEPEAEPP QSSASDTTTE EDLALCLMML SRDKWRKNKV  180
SSSKEVVEEI DAEASEGDKM INRATTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVT  240
NKTDYDIVLV AAEKRIHECP ICLRVFASGQ ALGGHKRSHG LGNLSVNHHH QVRIESVKEK  300
MIDLNLPAPT EEEEVSMVFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602837.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-129ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A0D3DUM80.0A0A0D3DUM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GD650.0A0A3P6GD65_BRAOL; Uncharacterized protein
STRINGBo8g095300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-119C2H2-like zinc finger protein