PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602812.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 201aa    MW: 23086 Da    PI: 5.1849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-172979155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r++    +Wv+eIr+p     +  +r++lg++ tae+Aa+a++ a+ +l+g
  XP_013602812.1 29 PVYRGIRRRN-GDKWVCEIREP-----ThqRRIWLGTYPTAEMAARAHDVAAFALRG 79
                    68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-122979IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-203089IPR016177DNA-binding domain
SMARTSM003802.1E-263093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-303089IPR001471AP2/ERF domain
PROSITE profilePS5103222.2343087IPR001471AP2/ERF domain
PRINTSPR003671.2E-73142IPR001471AP2/ERF domain
CDDcd000181.04E-273189No hitNo description
PRINTSPR003671.2E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDNNDDIMLA EMRPKKRAGR IVFKETRHPV YRGIRRRNGD KWVCEIREPT HQRRIWLGTY  60
PTAEMAARAH DVAAFALRGR SACLNFADSA WRLPVPESTD PDVIRRVAAE AAEMFRPTEF  120
ESGITVLPSY GNEVYLGSGS GWEERNMYGY VEEEEVSTTM RRLASEPLMS PPRSYMEGMT  180
SNAYMGEEMC CEDTSLWSYS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141786371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602812.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135940.0KJ013594.1 Brassica rapa subsp. chinensis CBF6A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602812.11e-148PREDICTED: dehydration-responsive element-binding protein 1F
SwissprotQ9LN861e-110DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078FSF91e-147A0A078FSF9_BRANA; BnaC08g41070D protein
TrEMBLA0A0D3DXQ51e-147A0A0D3DXQ5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FLS11e-147A0A3P6FLS1_BRAOL; Uncharacterized protein
STRINGBo8g108050.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-113ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]