PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602662.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1100aa    MW: 119985 Da    PI: 8.0627
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.98.7e-08303321119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  XP_013602662.1 303 CGRHRCERTCHVGPCDPCQ 321
                     ******************6 PP
2zf-NF-X117.68.3e-06367384118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH+GpC+ C
  XP_013602662.1 367 CGNHFCSEVCHPGPCGDC 384
                     ****************99 PP
3zf-NF-X125.62.6e-08426443118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C++ CH G+CppC
  XP_013602662.1 426 CGLHTCNEVCHSGDCPPC 443
                     ****************** PP
4zf-NF-X116.42e-05524542119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++ CH G CppC 
  XP_013602662.1 524 CGQHSCESSCHSGHCPPCL 542
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.09E-5124194No hitNo description
PROSITE profilePS500168.911132193IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.465135191IPR001841Zinc finger, RING-type
PROSITE patternPS013590135190IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.35E-5224286No hitNo description
SMARTSM004380.023248266IPR000967Zinc finger, NF-X1-type
PfamPF014228.2250265IPR000967Zinc finger, NF-X1-type
CDDcd060088.16E-13293341No hitNo description
PfamPF014223.3E-6303320IPR000967Zinc finger, NF-X1-type
SMARTSM004384.0E-5303322IPR000967Zinc finger, NF-X1-type
CDDcd060081.27E-8361402No hitNo description
PfamPF014221.2E-4367384IPR000967Zinc finger, NF-X1-type
SMARTSM004382.8E-5367386IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-13416463No hitNo description
PfamPF014225.1E-7426443IPR000967Zinc finger, NF-X1-type
SMARTSM004382.9E-6426445IPR000967Zinc finger, NF-X1-type
PfamPF0142218485496IPR000967Zinc finger, NF-X1-type
SMARTSM0043891485516IPR000967Zinc finger, NF-X1-type
CDDcd060081.67E-9514566No hitNo description
PfamPF014229.6E-4524541IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011524543IPR000967Zinc finger, NF-X1-type
CDDcd060081.62E-6571618No hitNo description
PfamPF0142224581598IPR000967Zinc finger, NF-X1-type
SMARTSM004380.079581599IPR000967Zinc finger, NF-X1-type
PfamPF014220.028634649IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13634664IPR000967Zinc finger, NF-X1-type
SMARTSM004380.97673694IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.7E-4925976IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1100 aa     Download sequence    Send to blast
MSSQVRRDRP RSNPQQTWVP RGAAVVNEPS LPPPANTDPA AAAASRPLRQ RNGSGRPSYN  60
QHQRSNFAGP PPQPNRQRRN NAPGILPQRV ASRTRPVNQG KMVVKEEENT VLTDASLPQL  120
VQELQDKLVK SSIECMICYD MVGRSANIWS CSSCYSIFHM HCIKKWARAP TSVDLLAEKN  180
QGDNWRCPGC QSVQLTSSRE ICYRCFCGKR KDPPSDPYLT PHSCGEPCGK PLEREVSAVA  240
EMDRDDLCPH VCVLQCHPGP CPPCKAFAPP RSCPCGKKMI HTRCSERRSV LVCGQRCEKL  300
LDCGRHRCER TCHVGPCDPC QVPVNATCFC KKKAETVICG EMNVKGELKA DDGVYSCNFN  360
CGKPLGCGNH FCSEVCHPGP CGDCELLPSR VKTCYCGKTR LEEQSRSSCL DPIPSCSNTC  420
RKVLPCGLHT CNEVCHSGDC PPCLVKVNQK CRCGSSFRTV ECYFTTSSET EKFVCAKSCG  480
RKKNCGRHRC SERCCPLLNA KKNDLSGDWD PHACQLPCGK NLRCGQHSCE SSCHSGHCPP  540
CLEMIFTDLT CACGRTSIPP PLPCGTPVPS CQLPCSIPQP CGHSATHGCH FGDCPPCSAP  600
VEKKCVGGHV VLRNIPCGLK DIRCNKICGK TRRCGLHACA RTCHPEPCDG YNESEAVSRV  660
TCGQTCGAPR RDCRHVCATL CHPSLPCPDS RCEFPVTITC SCGRLTATVP CDAGGESAGN  720
LRVGSVNETS VLNKLPTPLQ PVESSDNRIP LGQRKLSCDD ECAKQERKRV LQDAFDITTP  780
NLDSLHFSEN SAMTEIISDI YRRDPKWVLA VEERFKFLVL GKARGSTSAL KVHVFCPMQK  840
DKLDTVRLLA ERWKLAVSNG GWEPKKFIVV HVTQKSKPPT RIIGARGGAI SVGWPHPPSF  900
DPLVDMDPRL VVSLLDLPRE ANVSAVVLRF GGECELVWLN DKNALAVFHD PARAATAMRR  960
LDHGSVYNGA VVVQNAAQSQ SLGNNAWGKL PSSSSWDVQK ANPWKKAVIQ ESDDSWGADD  1020
SPIGGSSTDT QASAWRSATS NAPIVTSANR WSVLEPEKPK TSALEPLVQS GESSSSEATG  1080
KKLVEGSGEE VVDDWEKVCE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602662.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602662.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D3DNU50.0A0A0D3DNU5_BRAOL; Uncharacterized protein
STRINGBo8g059130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1