PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602588.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 500aa    MW: 55608.7 Da    PI: 7.8251
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96e-10199237745
                     HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  XP_013602588.1 199 LRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 237
                     69************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-5192270IPR004827Basic-leucine zipper domain
CDDcd147081.55E-22197249No hitNo description
PfamPF001704.0E-7198237IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7198240No hitNo description
SuperFamilySSF579599.38E-7199239No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.691200239IPR004827Basic-leucine zipper domain
PfamPF141442.6E-29278353IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDNHRVISEA TNHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSSFDYGGL EEAMVLQGVN  60
SRSHEAKPRL FAGGGATTLE MFPSWPIRTH KSLPTESSKS GGESSDSGSA NFSGKAESQL  120
PESPMSSKQN HHLMLQHHHN NNMANSTSAS GLPSSSRTLA PPKASEDKRK ATTSGKLLDA  180
KAVSLLFKNV LKIELYQTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQELQRA  240
RSQGVFMGGC GPHGPNITSG AAMFDMEYGR WLEDENRHMS EIRTGLQAHL SDNDLRLIVD  300
GYIAHFDEVF RLKAVAAKAD VFHLIIGTWM SPAERCFIWM AGFRPSDFIK ILVSQMDLLT  360
EQQLMGIYSL QHSSQQAEEA LSQGLEQLQQ SLIDTLAASQ VIDGMQQMAV ALGKVSNLEG  420
FIRQADNLRQ QTVHQLRQIL TVRQAARCFL LIGEYYGRLR ALSSLWLSRP PETLINDETS  480
CQTTTDLQVV QSSHNQFSNF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602588.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankAK2222040.0AK222204.1 Arabidopsis thaliana mRNA for bZip protein AtbZip21, complete cds, clone: RAFL25-08-O22.
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602588.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0D3DYF60.0A0A0D3DYF6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMH30.0A0A3P6FMH3_BRAOL; Uncharacterized protein
STRINGBo8g112540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]