PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013602588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 500aa MW: 55608.7 Da PI: 7.8251 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 6e-10 | 199 | 237 | 7 | 45 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_013602588.1 199 LRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 237 69************************8766666655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.6E-5 | 192 | 270 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.55E-22 | 197 | 249 | No hit | No description |
Pfam | PF00170 | 4.0E-7 | 198 | 237 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 198 | 240 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-7 | 199 | 239 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 200 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.691 | 200 | 239 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.6E-29 | 278 | 353 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MDNHRVISEA TNHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSSFDYGGL EEAMVLQGVN 60 SRSHEAKPRL FAGGGATTLE MFPSWPIRTH KSLPTESSKS GGESSDSGSA NFSGKAESQL 120 PESPMSSKQN HHLMLQHHHN NNMANSTSAS GLPSSSRTLA PPKASEDKRK ATTSGKLLDA 180 KAVSLLFKNV LKIELYQTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQELQRA 240 RSQGVFMGGC GPHGPNITSG AAMFDMEYGR WLEDENRHMS EIRTGLQAHL SDNDLRLIVD 300 GYIAHFDEVF RLKAVAAKAD VFHLIIGTWM SPAERCFIWM AGFRPSDFIK ILVSQMDLLT 360 EQQLMGIYSL QHSSQQAEEA LSQGLEQLQQ SLIDTLAASQ VIDGMQQMAV ALGKVSNLEG 420 FIRQADNLRQ QTVHQLRQIL TVRQAARCFL LIGEYYGRLR ALSSLWLSRP PETLINDETS 480 CQTTTDLQVV QSSHNQFSNF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013602588.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ314757 | 0.0 | AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene). | |||
GenBank | AK222204 | 0.0 | AK222204.1 Arabidopsis thaliana mRNA for bZip protein AtbZip21, complete cds, clone: RAFL25-08-O22. | |||
GenBank | HQ132743 | 0.0 | HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602588.1 | 0.0 | PREDICTED: transcription factor TGA2-like isoform X1 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A0D3DYF6 | 0.0 | A0A0D3DYF6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FMH3 | 0.0 | A0A3P6FMH3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g112540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5524 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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