PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602393.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 288aa    MW: 32518.8 Da    PI: 4.3886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1895145256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdps+   r r++lg+f taeeAa  +++a+ k++g+
  XP_013602393.1  95 KYRGVRRRP-WGKFAAEIRDPSS---RSRVWLGTFVTAEEAAMVYDRAAIKFRGH 145
                     8********.**********965...4*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-2995151IPR001471AP2/ERF domain
CDDcd000183.23E-3195151No hitNo description
SuperFamilySSF541719.81E-2195152IPR016177DNA-binding domain
PROSITE profilePS5103222.52495152IPR001471AP2/ERF domain
SMARTSM003802.4E-3695158IPR001471AP2/ERF domain
PfamPF008471.5E-1195145IPR001471AP2/ERF domain
PRINTSPR003676.0E-1096107IPR001471AP2/ERF domain
PRINTSPR003676.0E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MERRTRRVKF TEHHKVTPVP AKPSNDSPRV VRIAYTDPFA TDSSSDDDDD NNSNVTVAPR  60
VKRYVEEIRF GETKSSSSRK ARKGGNDDVS ANPVKYRGVR RRPWGKFAAE IRDPSSRSRV  120
WLGTFVTAEE AAMVYDRAAI KFRGHNAQTN FLTPPPPPSP SPVIDLETVS GCDSGSQSLR  180
SPTSVLRFNF NEKTEVEIEP IELSSEVEPA SLFPDPYSLP DLCLAGEYFW DSETPPEPLF  240
LDDEIEIEKP LLNPVIPKEE NEPEDFSFDL SEDFDASPWD VDNFFEND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2096151359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2096151662ATERF1
3gcc_A4e-2096151662ATERF1
5wx9_A2e-1985151471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602393.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893580.0AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602393.10.0PREDICTED: ethylene-responsive transcription factor CRF6
RefseqXP_013708750.10.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-113CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A0D3DUW20.0A0A0D3DUW2_BRAOL; Uncharacterized protein
STRINGBo8g096140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.17e-96cytokinin response factor 6