PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013602393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32518.8 Da PI: 4.3886 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 95 | 145 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps+ r r++lg+f taeeAa +++a+ k++g+ XP_013602393.1 95 KYRGVRRRP-WGKFAAEIRDPSS---RSRVWLGTFVTAEEAAMVYDRAAIKFRGH 145 8********.**********965...4*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 95 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.23E-31 | 95 | 151 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-21 | 95 | 152 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.524 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-36 | 95 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-11 | 95 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MERRTRRVKF TEHHKVTPVP AKPSNDSPRV VRIAYTDPFA TDSSSDDDDD NNSNVTVAPR 60 VKRYVEEIRF GETKSSSSRK ARKGGNDDVS ANPVKYRGVR RRPWGKFAAE IRDPSSRSRV 120 WLGTFVTAEE AAMVYDRAAI KFRGHNAQTN FLTPPPPPSP SPVIDLETVS GCDSGSQSLR 180 SPTSVLRFNF NEKTEVEIEP IELSSEVEPA SLFPDPYSLP DLCLAGEYFW DSETPPEPLF 240 LDDEIEIEKP LLNPVIPKEE NEPEDFSFDL SEDFDASPWD VDNFFEND |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 96 | 151 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 96 | 151 | 6 | 62 | ATERF1 |
3gcc_A | 4e-20 | 96 | 151 | 6 | 62 | ATERF1 |
5wx9_A | 2e-19 | 85 | 151 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013602393.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189358 | 0.0 | AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602393.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF6 | ||||
Refseq | XP_013708750.1 | 0.0 | ethylene-responsive transcription factor CRF6 | ||||
Swissprot | Q9M374 | 1e-113 | CRF6_ARATH; Ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | A0A0D3DUW2 | 0.0 | A0A0D3DUW2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g096140.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61630.1 | 7e-96 | cytokinin response factor 6 |