PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602256.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 328aa    MW: 36175 Da    PI: 5.8347
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.3e-10136185554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   + 
  XP_013602256.1 136 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 185
                     9****************************************998876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-16132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909134197IPR004827Basic-leucine zipper domain
PfamPF001703.7E-8136184IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-10136187No hitNo description
Gene3DG3DSA:1.20.5.1706.6E-10136191No hitNo description
CDDcd147032.14E-21137186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEKSDPQPPN ADQIPSSFHR RSRSDDMSMF MFMDPLSSSG PPPSSDDLPS DDDLFSSFID  60
VDSLSSNPHP TTTAFPNHAA AAAAASNSVP SSSSRPRHRH SNSVDAGCAM YANEIMDAKK  120
AMPPEKLSEL WNVDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQSLQ TEATTLSAQL  180
TLFQRDTNGL ANENTELKLR LQAMEQQAHL RNALNEALRK ELERMKIETG EISGNSDSFD  240
MGMQQVQYSP STFMAIPPYH HGSINNGQDM QQMHGYNPME AMSNSQSVSE FLQNGRLQGL  300
EISSNNNSSS LVKSEGPSLS ASESSSAY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602256.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228732e-82BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A078FA860.0A0A078FA86_BRANA; BnaC08g44990D protein
TrEMBLA0A0D3DYP40.0A0A0D3DYP4_BRAOL; Uncharacterized protein
STRINGBo8g114410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-123basic leucine-zipper 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]