PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602254.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 285aa    MW: 31350.5 Da    PI: 7.5699
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-333791155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+R 
  XP_013602254.1 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRQ 91
                    79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9743494IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-323491IPR009057Homeodomain-like
SuperFamilySSF466891.2E-163691IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-243791IPR006447Myb domain, plants
PfamPF002491.5E-73989IPR001005SANT/Myb domain
PfamPF143797.0E-24135184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYSAIRSSLP LDGSMGEYSD GTNLPVDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP  60
DKATPKTIMR TMGVKGLTLY HLKSHLQKFR QGRQLCKEST ENSKDVSCAA ESQDTGSSST  120
SSLRLAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEYGQVQ RRLQLRIEAQ GKYLQSVLEK  180
ACKAIEDQAV AFAGLEAARE ELSELAIKVS NGSQVPFHTT KMTVPSLSEL AVAIEHKNNC  240
SAESSLTSIP VSATLMKRHR GVFRNGESVV VGHETGWVMP SSSLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-203793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-203793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-203793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-203793157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-203793258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602254.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532350.0AK353235.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602254.10.0PREDICTED: myb family transcription factor APL isoform X1
RefseqXP_013708594.10.0protein PHR1-LIKE 3 isoform X1
SwissprotQ8LAJ70.0PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A3P6FPU70.0A0A3P6FPU7_BRAOL; Uncharacterized protein
STRINGBo8g035520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.21e-173G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]