PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601964.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 689aa    MW: 76370 Da    PI: 7.1437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-192374556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_013601964.1 23 HRHTPHQIQRLESAFNECQHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQKK 74
                    689**********************************************988 PP
2START139.73e-442084302206
                     HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S.EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddke...qWdetla.kaetl 82 
                     +a +a++el+++ + +ep+W k     + +n   +   f+++ +        ++ea+r sgvv+ ++++lv  l+d+ +    +   +  + + l
  XP_013601964.1 208 IAVTAMEELIRLTQTNEPLWIKNDgarDVLNLGSYENMFPRASSrggknhnVRVEASRSSGVVFINAMTLVDMLMDSVKsaeLFPSVVVaSSKSL 302
                     6889******************999996666666666666655566677778**************************666655443336***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+ssg       al+lm  elq+lsplvp R+f ++Ry++q + g+w+iv vS + +q+ + +    R  ++pSg+li+++sng++kvtwveh+
  XP_013601964.1 303 AVVSSGlrgnhgDALHLMLEELQVLSPLVPtREFSVLRYCQQIEHGTWAIVNVSYELPQFIS-H---SRPYRFPSGCLIQDLSNGYCKVTWVEHI 393
                     ************************************************************98.4...55666*********************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + +++ p h++++  v+ gla+ga +w atlqr ce+
  XP_013601964.1 394 EISEQEPiHEMFKDHVREGLAFGAERWIATLQRMCER 430
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-21470IPR009057Homeodomain-like
SuperFamilySSF466898.36E-191076IPR009057Homeodomain-like
PROSITE profilePS5007117.3291676IPR001356Homeobox domain
SMARTSM003891.1E-181780IPR001356Homeobox domain
CDDcd000862.24E-191877No hitNo description
PfamPF000464.2E-172374IPR001356Homeobox domain
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PROSITE profilePS5084847.563198433IPR002913START domain
SuperFamilySSF559612.88E-28199431No hitNo description
CDDcd088752.73E-98202429No hitNo description
SMARTSM002343.9E-30207430IPR002913START domain
PfamPF018524.5E-37208430IPR002913START domain
Gene3DG3DSA:3.30.530.207.9E-5318397IPR023393START-like domain
SuperFamilySSF559611.65E-18446651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MKMEFLGDSS ETDKKTMKKK RFHRHTPHQI QRLESAFNEC QHPDEKQRMQ LSRELGLAPR  60
QIKFWFQNRR TQKKAQHERA DNCALKEENH RIRCENIAIR EALKHTICPT SCGDAPSHED  120
SYFDEQKLRI ENAHLKEELE RVSSIAAKFM GRPLSHLPPL LNQMPFHGGP SLDFDLIPGS  180
CSSMAAPTLP SQPNLVLSDI DKSVMTNIAV TAMEELIRLT QTNEPLWIKN DGARDVLNLG  240
SYENMFPRAS SRGGKNHNVR VEASRSSGVV FINAMTLVDM LMDSVKSAEL FPSVVVASSK  300
SLAVVSSGLR GNHGDALHLM LEELQVLSPL VPTREFSVLR YCQQIEHGTW AIVNVSYELP  360
QFISHSRPYR FPSGCLIQDL SNGYCKVTWV EHIEISEQEP IHEMFKDHVR EGLAFGAERW  420
IATLQRMCER FTALHEPATS SVIPSPEGKR SVMKLAQRMV SNFCLSVGTS NNTRSSTVVS  480
GMNEFGIRVT SYKSQHEPNG MVLCAATSFW LPVSPLIVFN FLKDERTRPQ WDVLLNGSSV  540
QEVAHIANGS HPGNCISILR GFNASSSQNN MLILQESCVD SSGSLVVYTP LDLPALNMAM  600
SGQDTSYIPI LPSGFAVSPD GSKNNQIPEL KVEGGGGGGG GSLITVGFQI MVSSLQSGKL  660
NMESMETVNN LISSTVHHIK TTLNCPSTA
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}.
UniprotTISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and stamen filament epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601964.10.0PREDICTED: homeobox-leucine zipper protein HDG12-like
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLA0A0D3DQ390.0A0A0D3DQ39_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G9370.0A0A3P6G937_BRAOL; Uncharacterized protein
STRINGBo8g067530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]