PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013601892.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 172aa MW: 19004.3 Da PI: 8.7287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013601892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	19	41	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C + F ++ +L +H +t H XP_013601892.1 19 ECSLCQRIFFTPQDLITHTNTfH 41 7*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	18	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNGGFGMRKD LTRVSNPLEC SLCQRIFFTP QDLITHTNTF HSNHHYSNFS SSAAAPAPAT 60 FRHYPNLNRN PNPAFPAMNS SDLNNYRSGP TDEQGRLLKG SAAMTPARNT NVLFGQQEKP 120 KLMYLFPTMP SEGLRTLPLL SQLEERTPQD TATEQGGAIS SSIDLTLRLG FS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013601892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189246	0.0	AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBank	AC232437	0.0	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601892.1	1e-125	PREDICTED: uncharacterized protein LOC106309412
TrEMBL	A0A0D3DZ08	1e-123	A0A0D3DZ08_BRAOL; Uncharacterized protein
STRING	Bo8g115550.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	6e-32	C2H2-like zinc finger protein