PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 313aa MW: 33672 Da PI: 6.1106 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 78.2 | 1e-24 | 218 | 280 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+++ XP_013601847.1 218 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTQN 280 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.6E-28 | 4 | 91 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 9.4E-22 | 215 | 281 | No hit | No description |
Pfam | PF00170 | 1.5E-22 | 218 | 280 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 4.4E-23 | 218 | 282 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.633 | 220 | 283 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-12 | 221 | 278 | No hit | No description |
CDD | cd14702 | 8.60E-24 | 223 | 273 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 225 | 240 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGTSEEKTPS KPASSTQDIP PTPYPDWSNS MQAYYGGGGT PSPFFPSPVG SPSPHPYMWG 60 AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPSSAPTN ETVKEQAPGK KSKGSLKRKG 120 EGGEKAPSGS GNDGVSHSDE SVTGGSSDEN DENANHQEHG SVRKPSFGQM LADASSQSNT 180 TGEMIQGSVP MKPLAPGTNL NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR 240 KQAECEQLQQ RVESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE 300 QNADGSKDGE GTD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 240 | RRSRLRK |
2 | 234 | 241 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601847.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X83922 | 0.0 | X83922.1 B.napus mRNA for G-Box binding factor 1A. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601847.1 | 0.0 | PREDICTED: G-box-binding factor 1 isoform X2 | ||||
Swissprot | P42774 | 0.0 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A0D3A1H0 | 0.0 | A0A0D3A1H0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g005460.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-165 | G-box binding factor 1 |