PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601837.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 292aa    MW: 32462.1 Da    PI: 9.0285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1758108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  XP_013601837.1  58 TRYRGVRRRP-WGRYAAEIRDPTS---KERRWLGTFDTAEQAACAYDCAAREFRG 108
                     68********.**********854...4999*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1058108IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2159117IPR016177DNA-binding domain
PROSITE profilePS5103222.43159116IPR001471AP2/ERF domain
SMARTSM003806.2E-3259122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2859116IPR001471AP2/ERF domain
PRINTSPR003672.4E-96071IPR001471AP2/ERF domain
CDDcd000181.77E-2166115No hitNo description
PRINTSPR003672.4E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEEALRKFNE STHSFIPGYE PDPIPLTRIF ANDANSPQVN NTLSSKEAIV TITGSGRTRY  60
RGVRRRPWGR YAAEIRDPTS KERRWLGTFD TAEQAACAYD CAAREFRGSK ARTNYTYPVT  120
NPFAEPRFSF SSKKSTKAVR SPIPSPQKMN TKSLLWYSSR ETATNGSSSS SCSLTKTASI  180
SSSADENYTE FFPQEHSDSG LLQDIVQEFL KKKRNQPPPL IPPPPPSPPM VGHLKNFREF  240
SANSLFQPMV EASKLDCYGN ISYQDGDSGF FYGMSSVADG GFTYGSDAWG LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1753115871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the embryo at four-cell stage. At the globular stage, localized in cotyledons primordia. Later confined to embryonic cotyledons tips. Expressed from embryogenesis onward in the central zone of the shoot apical and floral meristems, in organ anlagen, and (transiently) in the distal domains of organ primordia. {ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
UniprotTISSUE SPECIFICITY: Expressed in shoot apical and floral meristems, and in organ primordia. Transient expression during shoot regeneration. {ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601837.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601837.10.0PREDICTED: ethylene-responsive transcription factor ESR1
SwissprotQ9SAD43e-80ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLA0A0D3DXM80.0A0A0D3DXM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FLN40.0A0A3P6FLN4_BRAOL; Uncharacterized protein
STRINGBo8g107780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-52ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]