PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 256aa MW: 30136.2 Da PI: 6.3237 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.6e-21 | 27 | 85 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eq+ +Lee++ + +r+p++++++e+A+kl +++ ++V++WFqN++ +e+ XP_013601823.1 27 SRWNPTPEQTMVLEEVYSSgTRTPTTQQIQEIASKLqkygRIEGKNVFYWFQNHKSRER 85 7*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 110 | 1.4e-35 | 26 | 87 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ ++Lee+y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k XP_013601823.1 26 HSRWNPTPEQTMVLEEVYSSGTRTPTTQQIQEIASKLQKYGRIEGKNVFYWFQNHKSRERLK 87 68**********************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.256 | 22 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-13 | 23 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.0E-5 | 24 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-18 | 27 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-9 | 27 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.86E-5 | 28 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDDIRNDEQI ITGSAGEPKE REKYMHSRWN PTPEQTMVLE EVYSSGTRTP TTQQIQEIAS 60 KLQKYGRIEG KNVFYWFQNH KSRERLKRRR GDQQGVTTIS NVHEETLRKD NVIVDTANKD 120 SSSVSRRRGD HRVIHTSTYL SPSPTHPQKN SIDDGKREVY KRGLEEEKET TSQNQIHPSN 180 TSDFNYHLIT ASKPSQEEEQ QYKLNDDEEE TRKSRTLDLF PVIENQETIG FEEKNTKPNQ 240 LYCNYCYYYE FMPLMN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601823.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601823.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
TrEMBL | A0A0D3DX85 | 0.0 | A0A0D3DX85_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g106350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 9e-48 | WOX family protein |