PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 394aa MW: 44210.5 Da PI: 7.5011 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.5 | 8e-10 | 266 | 306 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k ++r+ +NRe Arrs +R + i +Leekv++Le+e +L XP_013601787.1 266 KYAKRMLSNREGARRSVKRTAQHILNLEEKVQTLEKEGVTL 306 779*********************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-8 | 262 | 326 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-6 | 264 | 339 | No hit | No description |
PROSITE profile | PS50217 | 8.611 | 264 | 327 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.8E-7 | 266 | 307 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.09E-6 | 267 | 313 | No hit | No description |
CDD | cd14702 | 2.42E-7 | 269 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDRQAENVPS QTSFVLSTQF PCPPSGQNRG SMPPPRRSSL PPLPPKRPTT TTTTRHQQIG 60 LQNFNPGPRL LPPQSPVFRS WTPMSSPAPS SSFQYLQSAP PVAYHNAALP PRPPTTSVSA 120 RGSAYSGNDS AVFPSMDAMK MIYPEPIEMP VGVNYSKEGH GEPAGFMDEQ VYMDLDEIFD 180 FSTKDDDVAR IGSGSSENNK RNAGVKKRAA PSRKTRRKSV SPSVDCNNLN NWKSSVAIEK 240 GMFTESQMNE IARSKTLQKY VVTDPKYAKR MLSNREGARR SVKRTAQHIL NLEEKVQTLE 300 KEGVTLTVHT SFAEKKKLGL EEENKQLRIR LQEIQDQSKR ANASEECNNE EINWVKQKGT 360 EEVFPDWDTT MDEFLLEQLN ELNEEPETNN CGFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601787.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189480 | 0.0 | AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601787.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
TrEMBL | A0A3P6GF71 | 0.0 | A0A3P6GF71_BRAOL; Uncharacterized protein | ||||
STRING | Bra031173.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21543 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 5e-17 | bZIP family protein |