PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601512.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 246aa    MW: 28845.7 Da    PI: 6.9304
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK758.8e-24125175252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRk  sl
  XP_013601512.1 125 AKPLSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDLGIQRWPHRKFMSL 175
                     57899******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.37106195IPR003035RWP-RK domain
PfamPF020423.7E-19128175IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMNSFSNLEC DKVFGKEDKP FSFLEYFSYQ SEFTNNFFGL EDEIISSGNY DYYLPSASSF  60
LALPDLEPIS IVSHEDILND YGSVSWTEKE SVFDEHQRED FDLVKETETI KKRVREECAY  120
SSYAAKPLSK ETISLYYDMP IAQAAKELNI GLTLLKKKCR DLGIQRWPHR KFMSLDNLIE  180
NVKKLEKGEG NADEQRKKLE KLTKEKKRMK ESPDLEYEDK TKRLRQACYK ANHKRKRRLV  240
MSTSTT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118091e-47AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026841e-47CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601512.10.0PREDICTED: protein RKD1
SwissprotQ9M9U91e-95RKD1_ARATH; Protein RKD1
TrEMBLA0A0D3DQ951e-171A0A0D3DQ95_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTF01e-171A0A3P6FTF0_BRAOL; Uncharacterized protein
STRINGBo8g068090.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-90RWP-RK domain-containing protein