PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 414aa MW: 45860 Da PI: 8.0839 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.7 | 4.2e-20 | 33 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e+ aL++a+++++ +lrrg+l++++W++v++++ +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ XP_013601310.1 33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPILD 122 7*************************************888777889****************************9999*******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-20 | 32 | 124 | No hit | No description |
SMART | SM00595 | 0.0097 | 41 | 129 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSTPDGSPVA MAVDPSTAVT VATTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA 60 ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPI 120 LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM 180 KMYGGFDSDH DSGGGFGLKR RYNGNPKVSG DFDADSDDEI VLVPKATRLK GSHGKPSSGE 240 FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN 300 GYGRKDGSYP RNNNTGVSNG YGSSSRFKHE QMNAAADVES DPIDEVVSSV KMLTEMFVRV 360 ENSKMEMMRE MEKTRMEMEL KHCQMMLESQ QQIIGAFAEA LSEKKSTNAR RPGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601310.1 | 0.0 | PREDICTED: uncharacterized protein LOC106308728 | ||||
Refseq | XP_013671350.1 | 0.0 | uncharacterized protein BNAC01G21240D isoform X2 | ||||
Refseq | XP_013671351.1 | 0.0 | uncharacterized protein BNAC01G21240D isoform X1 | ||||
Refseq | XP_022558038.1 | 0.0 | uncharacterized protein BNAC01G21240D isoform X3 | ||||
Swissprot | O23550 | 1e-155 | FRIP2_ARATH; Protein FIP2 | ||||
TrEMBL | A0A078HCS5 | 0.0 | A0A078HCS5_BRANA; BnaC01g21240D protein | ||||
TrEMBL | A0A0D3A7F0 | 0.0 | A0A0D3A7F0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G0F3 | 0.0 | A0A3P6G0F3_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g052990.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10483 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 1e-21 | Trihelix family protein |
Publications ? help Back to Top | |||
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