PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 270aa MW: 31079.5 Da PI: 9.7382 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 144 | 197 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+ XP_013600917.1 144 PRMRWTTTLHAHFVRAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 197 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-15 | 141 | 198 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 142 | 198 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-23 | 144 | 198 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-7 | 145 | 196 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MELFPSQPDL NLNISRRREE QDDKEQEQVE RRLVYQSQAS DSVRNASGHL IDTVKFTSNY 60 EPTKFYHYQE HNESQDQDSR SILMVSQNQT LGHYYYSPTP PFFFSEVNGQ HANPNYSYKL 120 HHGHRRQAQP QPQRCTAKRG VRAPRMRWTT TLHAHFVRAV QLLGGHERAT PKSVLELMDV 180 QDLTLAHVKS HLQMYRTIKS TEKPTTSPGQ SDTCENGSQV KSERQARDLQ GLWNNSSSEA 240 RLHLKANASG LDVSSNKTAS RHSLILERKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-15 | 145 | 199 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-15 | 145 | 199 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-15 | 145 | 199 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-15 | 145 | 199 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 145 | 199 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600917.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353455 | 1e-174 | AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600917.1 | 0.0 | PREDICTED: probable transcription factor KAN3 isoform X2 | ||||
Refseq | XP_013678014.1 | 0.0 | probable transcription factor KAN3 isoform X2 | ||||
Swissprot | Q941I2 | 1e-119 | KAN3_ARATH; Probable transcription factor KAN3 | ||||
TrEMBL | A0A078ISY3 | 0.0 | A0A078ISY3_BRANA; BnaCnng26550D protein | ||||
TrEMBL | A0A0D3DMJ2 | 0.0 | A0A0D3DMJ2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g049650.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 1e-120 | G2-like family protein |