PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013600796.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 301aa MW: 33547.9 Da PI: 10.3772

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013600796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.8	7.9e-15	26	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr..tsessstcp 80 +W+++ + +Li+a ++ +l+rg+l++++W+ev++++ ++ + +r+ +qCk++++ l+k+yk +k++ ++ + + +st+p XP_013600796.1 26 CWSEEATFTLIQAWGSRYVNLSRGSLRQNHWQEVANAVndrhfntgrnvsaAKSQPSRTDVQCKNRIDTLKKKYKVEKARVSGAggSGGYVSTWP 120 7***********************************************999999***************9999876654478999 PP trihelix 81 yfdqle 86 +f++l+ XP_013600796.1 121 FFSDLD 126 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-24	24	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MKHAVNGSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG SRYVNLSRGS LRQNHWQEVA 60 NAVNDRHFNT GRNVSAAKSQ PSRTDVQCKN RIDTLKKKYK VEKARVSGAG GSGGYVSTWP 120 FFSDLDDLLG ETFPTSSATP SLQMTIVPVP VAPRSAIPRR PAPAPAIMRI GGDNLLGYRG 180 NLNAFAAAAA AAASSPAYED DSDGSRSRSS GGKRKREEKQ GYKEVAEAIE RLREIYERVE 240 ERKRKEMVEL EKQRMRFAKE LECHRMQLFT EMRVRLHKLR RTKGPTSSAL GYGMMDLPSY 300 L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013600796.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189221	0.0	AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600796.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_013663657.1	0.0	trihelix transcription factor ASIL2-like
Refseq	XP_013663658.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3DU74	0.0	A0A0D3DU74_BRAOL; Uncharacterized protein
STRING	Bo8g092770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9635	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-102	sequence-specific DNA binding transcription factors