PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 36327.5 Da PI: 7.0064 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3.1e-28 | 13 | 67 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrW+ eLH+rF++av+qLGG++kAtPk ++++++++ Ltl+h+kS LQkYRl XP_013600748.1 13 KPRLRWSYELHHRFINAVNQLGGPNKATPKGLMRVLEIPELTLYHLKSYLQKYRL 67 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-26 | 10 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-18 | 13 | 67 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.02E-13 | 13 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.7E-18 | 114 | 160 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDNDKNHKTE EPKPRLRWSY ELHHRFINAV NQLGGPNKAT PKGLMRVLEI PELTLYHLKS 60 YLQKYRLGIS ERFIGNKQDA GRSQECQSRE DFGDQLDIIV TEEKHDEPNN RNLQNKEAME 120 IQMEVQKKLH EQIETQQQLQ VRIEAQGKYL QSVLLKAQET LSGYNSFNLY AVASMANRNC 180 LSSSFSAPTQ ADEDNEVEEE YDFLCTKKPE NRGNASTRSS VDCSLASSES SEAKQDHHSQ 240 NNMRRSDKLQ FMEIKPEEVM DRNKRRWDDV LCVEQSNRKR SFKGHDGEDL GLGLNSFKVM 300 ETSYKSKSKS KSNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-16 | 13 | 66 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-16 | 13 | 66 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-16 | 13 | 66 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-16 | 13 | 66 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-16 | 13 | 66 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189385 | 0.0 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600748.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
Swissprot | F4I274 | 2e-89 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A078I551 | 0.0 | A0A078I551_BRANA; BnaCnng12310D protein | ||||
TrEMBL | A0A0D3DR88 | 0.0 | A0A0D3DR88_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FFS5 | 0.0 | A0A3P6FFS5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g076470.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 4e-93 | G2-like family protein |
Publications ? help Back to Top | |||
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