PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 314aa    MW: 36327.5 Da    PI: 7.0064
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53.1e-281367155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrW+ eLH+rF++av+qLGG++kAtPk ++++++++ Ltl+h+kS LQkYRl
  XP_013600748.1 13 KPRLRWSYELHHRFINAVNQLGGPNKATPKGLMRVLEIPELTLYHLKSYLQKYRL 67
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-261069IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-181367IPR006447Myb domain, plants
SuperFamilySSF466895.02E-131370IPR009057Homeodomain-like
PfamPF143791.7E-18114160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDNDKNHKTE EPKPRLRWSY ELHHRFINAV NQLGGPNKAT PKGLMRVLEI PELTLYHLKS  60
YLQKYRLGIS ERFIGNKQDA GRSQECQSRE DFGDQLDIIV TEEKHDEPNN RNLQNKEAME  120
IQMEVQKKLH EQIETQQQLQ VRIEAQGKYL QSVLLKAQET LSGYNSFNLY AVASMANRNC  180
LSSSFSAPTQ ADEDNEVEEE YDFLCTKKPE NRGNASTRSS VDCSLASSES SEAKQDHHSQ  240
NNMRRSDKLQ FMEIKPEEVM DRNKRRWDDV LCVEQSNRKR SFKGHDGEDL GLGLNSFKVM  300
ETSYKSKSKS KSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-161366255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893850.0AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600748.10.0PREDICTED: myb family transcription factor APL-like isoform X1
SwissprotF4I2742e-89PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A078I5510.0A0A078I551_BRANA; BnaCnng12310D protein
TrEMBLA0A0D3DR880.0A0A0D3DR88_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FFS50.0A0A3P6FFS5_BRAOL; Uncharacterized protein
STRINGBo8g076470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.24e-93G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]