PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600715.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 333aa    MW: 36980.8 Da    PI: 9.3651
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.1e-3969128362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprC+stntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  XP_013600715.1  69 EAALKCPRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 128
                     6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3652126IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.33972126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVFSSLPVNQ FDSHNWQQQG NTQQLDRVTS DQNPLSHFSS PPGSRAGSSQ TRENSMVERA  60
RIAKIPLPEA ALKCPRCEST NTKFCYFNNY NLTQPRHFCK TCRRYWTRGG ALRNVPVGGG  120
FRRNKRSKPK STVVVSADNN NTSSSLSCHT RYSSPSKFLS YGQLPGFDSN FPILPPFQSL  180
GDYNMSGMSS SGGILDPWRI SSMQQVQQSP FLINTKGLEE SSNVMYPSLE GNEGVSHAIP  240
RQESSDHSNQ LRYKPLTDMA SRVDQTAQAR YVKAEENDRG GNGVNNLSRN FLGNINIKPV  300
EENDGYTCWG SSSNISSSWT GFTSNNSTGH LSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121128RRNKRSKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600715.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600715.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U11e-140DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A0D3DTB40.0A0A0D3DTB4_BRAOL; Uncharacterized protein
STRINGBo8g089670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-156OBF-binding protein 3