PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600626.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 337aa    MW: 36972.8 Da    PI: 10.2938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.8e-31268326259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  XP_013600626.1 268 SDEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 326
                     69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.5E-15233265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-33255326IPR003657WRKY domain
PROSITE profilePS5081130.308262328IPR003657WRKY domain
SuperFamilySSF1182906.15E-26265326IPR003657WRKY domain
SMARTSM007742.4E-37267327IPR003657WRKY domain
PfamPF031062.4E-26269325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAVELMMNSY GGVRVKGEDD GGFSANMEDT ALREAASAGI HGVKEFLKLI GQKSQPTEEI  60
TAVTDVAVNS FKKVISLLGR SRTGHARFRR APMKPKTEEG GGDWRTEEKT GPTATTTVVL  120
NRQKPEQNGG SAFRVYCPTP IHRRPPLSHN HSLTTKNGPS SSSTNGRPQE PSTINFAQSP  180
PVSVSNSFMS SHRCDTEINQ MSSGFELTNP SSQISGSIGK PPLSSVSLKR RCDSSPSSRC  240
HCTKKRKSRV KRVIRVPAVS SKMADIPSDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP  300
ARKHVERALD DAMMLIVTYE GDHNHALVLE THHDKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21255327273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228246KRRCDSSPSSRCHCTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931320.0KM593132.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600626.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-173WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D3A5W50.0A0A0D3A5W5_BRAOL; Uncharacterized protein
STRINGBo1g037740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-163WRKY DNA-binding protein 7