PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600595.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 462aa    MW: 50299.5 Da    PI: 7.6574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12.1e-34216272259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers  d++v+ei+Y+g+Hnhe
  XP_013600595.1 216 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNHE 272
                     8****************************************.***************8 PP
2WRKY104.84.6e-33363421159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_013600595.1 363 LDDGYRWRKYGQKIVKGNPYPRSYYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 421
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30204274IPR003657WRKY domain
SuperFamilySSF1182902.22E-26214274IPR003657WRKY domain
SMARTSM007746.6E-39215273IPR003657WRKY domain
PfamPF031061.8E-26216272IPR003657WRKY domain
PROSITE profilePS5081124.857216274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-36349423IPR003657WRKY domain
SuperFamilySSF1182901.57E-29355423IPR003657WRKY domain
PROSITE profilePS5081137.952358423IPR003657WRKY domain
SMARTSM007749.5E-39363422IPR003657WRKY domain
PfamPF031064.3E-26364421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSEKEDLPST SKSTGAAPSR PTLNLPPRPF TETFFNGGVG FSPGPMTLVS NMFSDSDESS  60
RSFSQLLAGV VMPSPATGSE GNSNSSSVDV VDPRFKQSRP TGLMVSQSPS VFTVSPGLSP  120
AMLLDSPSFL GLFSPVQGSY GMTHQQALAQ VTAQAVQANA NMQPQTEHPP SSQVQSQNPT  180
SAPDSSQLAQ RETSDINIIE HNRSQQQPLN VDKPADDGYN WRKYGQKQVK GSEFPRSYYK  240
CTNPGCPVKK KVERSLDGQV TEIIYKGQHN HEPPQNNKRG NKDSNNNPNK TTREQHEAAS  300
QATTEQMSEA SDSEEVGNGE EPDPKRRSTE VRDLEPAAAV AASHRTVAEP RIIVQTTSEV  360
DLLDDGYRWR KYGQKIVKGN PYPRSYYKCT TQGCGVRKHV ERAATDPKAV VTTYEGKHNH  420
DPPAAKSSSH AAATAQLRHG GLANLNQQQP VACLRLKEEQ TI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-44216424878Probable WRKY transcription factor 4
2lex_A9e-44216424878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600595.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931590.0KM593159.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY87) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600595.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D3DPL60.0A0A0D3DPL6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FUG50.0A0A3P6FUG5_BRAOL; Uncharacterized protein
STRINGBo8g065800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]