PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013600451.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 373aa MW: 42035.8 Da PI: 6.9312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013600451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	208	227	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_013600451.1 208 FSCPVCFKTFNRYNNMQMHM 227 89*****************9 PP
2	zf-C2H2	15.1	6.6e-05	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ XP_013600451.1 292 FMCRKCGKVFAVRGDWRTHEKNC 314 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	208	235	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.4E-6	208	227	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	208	230	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	210	230	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.59E-6	274	312	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.1E-5	279	312	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	37	292	312	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MTDPYSNFFT GWFKSNPFHH YPNSSTYPSP PPPSSFFFPH SGDLHRPPPA STPPPSPPLR 60 EALPLLSLSP ANKQQHHHDH QIQEPPSISM DVDYDHHHHQ DDHNLDDHDP DVTVALHIGL 120 PSPSPQDMAS LLMMSSSSSS SRPTTHYLED MNGKKDLDND YHQGGVGGGE DDDEDSVGGD 180 GGCRISRLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES 240 LRGTQPTGML RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKV 300 FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHGAYGIDG FDEEDEPASE 360 VEQLDNDHES ISK

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MTDPYSNFFT GWFKSNPFHH YPNSSTYPSP PPPSSFFFPH SGDLHRPPPA STPPPSPPLR  60
EALPLLSLSP ANKQQHHHDH QIQEPPSISM DVDYDHHHHQ DDHNLDDHDP DVTVALHIGL  120
PSPSPQDMAS LLMMSSSSSS SRPTTHYLED MNGKKDLDND YHQGGVGGGE DDDEDSVGGD  180
GGCRISRLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES  240
LRGTQPTGML RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKV  300
FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHGAYGIDG FDEEDEPASE  360
VEQLDNDHES ISK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013600451.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254447	0.0	AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBank	BT021089	0.0	BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600451.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	0.0	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D3DU04	0.0	A0A0D3DU04_BRAOL; Uncharacterized protein
STRING	Bo8g092070.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-167	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]