PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013600341.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 418aa MW: 45967.1 Da PI: 9.7558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013600341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	179	201	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp C + F+ ++L++H+ + H XP_013600341.1 179 ACPQCEEIFPKLETLEHHQAVrH 201 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	178	201	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.01E-21	203	414	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.5E-12	206	415	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MAPLPLIPNQ TQSQTRLSSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK 60 NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVSYGNAR VIHRSDHSPE SSNLGQDAGL 120 LTRKPVTRGS SSTVISNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPSR YPVSPRICAC 180 PQCEEIFPKL ETLEHHQAVR HAVSELGPED SGRNIVDIIF KSSWLRKDSP IYNIERILKV 240 HNTQRTIQRF EDCRDAVKSQ VHASTRKEPR SAADGNELLR FQCTTVSCSL GSRGSTSLCS 300 NFPGCRVCTI IRHGFHAKTL RLGGGANEIK GVRTTASSGR AHDASRCFDQ RRAMLVCRVI 360 AGRVRRVQSD AQEDENGSGS YDSVAGPAGV YTNLDDLVVF NPKAILPCFV VIYKVSEP

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MAPLPLIPNQ TQSQTRLSSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK  60
NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVSYGNAR VIHRSDHSPE SSNLGQDAGL  120
LTRKPVTRGS SSTVISNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPSR YPVSPRICAC  180
PQCEEIFPKL ETLEHHQAVR HAVSELGPED SGRNIVDIIF KSSWLRKDSP IYNIERILKV  240
HNTQRTIQRF EDCRDAVKSQ VHASTRKEPR SAADGNELLR FQCTTVSCSL GSRGSTSLCS  300
NFPGCRVCTI IRHGFHAKTL RLGGGANEIK GVRTTASSGR AHDASRCFDQ RRAMLVCRVI  360
AGRVRRVQSD AQEDENGSGS YDSVAGPAGV YTNLDDLVVF NPKAILPCFV VIYKVSEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013600341.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189546	0.0	AC189546.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004M10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600340.1	0.0	PREDICTED: uncharacterized protein LOC106307823
Refseq	XP_013600341.1	0.0	PREDICTED: uncharacterized protein LOC106307823
TrEMBL	A0A0D3DJW8	0.0	A0A0D3DJW8_BRAOL; Uncharacterized protein
STRING	Bo8g016650.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-144	C2H2-like zinc finger protein