PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21533.6 Da PI: 4.4452 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 10 | 60 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++t+e+Aa+a +aa +l+g XP_013600333.1 10 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 60 89*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-21 | 10 | 69 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.25E-29 | 10 | 70 | No hit | No description |
Pfam | PF00847 | 2.4E-12 | 10 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-33 | 11 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-30 | 11 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.207 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEEEGSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTPEKAARA FDAALFCLRG 60 SNANFNFPDN PPAISGGGNM SRSEIREAAA RFANSEENVA REKDEEMMQQ ESTSNSAASS 120 SMMMRTMDVD DSEFLSMLPT VGSGNFAADF GLFPGFNDFS DEYSGERFRE ELSPTRDYES 180 YDGSAVHLWN F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 9 | 68 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 18 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600333.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY008390 | 1e-78 | AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds. | |||
GenBank | BT006191 | 1e-78 | BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-78 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T29M8 | 1e-78 | AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600333.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 1e-94 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0D3DWI6 | 1e-137 | A0A0D3DWI6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RTQ0 | 1e-137 | A0A3N6RTQ0_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6FKN3 | 1e-137 | A0A3P6FKN3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g102870.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-82 | ERF family protein |
Publications ? help Back to Top | |||
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