PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013600189.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 287aa MW: 32067.5 Da PI: 10.1157

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013600189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	339.7	7.5e-104	9	287	1	301
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnklla 83 mdddg+ rn+gyyepa +s+k nlglqlm +i +r++k+ r+ nl ++++ +++++++ m++ +++++ +++k+++ XP_013600189.1 9 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHQhhpephMSY----NWINQ-------HKDKFFN 88 9999..9**99899**********.9**********.99*99999899888888....*.......789 PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkk.kkrqrakkpkekkakkkkkksekskkk 177 +l+v+++ p++ +vl++t+s s+++ +l++ +++++e++p++++++ ++ kk+k ++++ ++ +k+kk +k+k+++ ++ XP_013600189.1 89 MLPVTTT-----PNYGNVLPQTSSSPSMHM----NLHH------HHHQTEEHPVKCEPDIVESKKRKpNSKAGGAPTKAKKPRKPKEENG---DS 165 9986.....99*********9999....3333......3344556677776666555444404445555667777777777332...23 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++++ +r+k kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL XP_013600189.1 166 NNANV--SRVKPAKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKL 258 33333..689********************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a++G++++ p+DLk+hWA+HGtnkfvtir XP_013600189.1 259 ASDGFNFGSPIDLKSHWARHGTNKFVTIR 287 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-162	9	287	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.9E-95	9	287	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGPFCIFAMD DDGFRNWGYY EPAAATSFKG NLGLQLMPTI DRNTKPFLPG RDPNLMIGQT 60 GSYHHHQHHP EPHMSYNWIN QHKDKFFNML PVTTTPNYGN VLPQTSSSPS MHMNLHHHHH 120 QTEEHPVKCE PDIVESKKRK PNSKAGGAPT KAKKPRKPKE ENGDSNNANV SRVKPAKKSF 180 DLVINGVNMD ISGLPVPVCT CTGAPQQCYR WGCGGWQSAC CTTNISMHPL PMSTKRRGAR 240 ISGRKMSQGA FKKVLEKLAS DGFNFGSPID LKSHWARHGT NKFVTIR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013600189.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600188.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1
Refseq	XP_013600189.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1
Refseq	XP_013707901.1	0.0	protein BASIC PENTACYSTEINE2-like isoform X1
Swissprot	Q9LDE2	1e-161	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A3P6GGD3	0.0	A0A3P6GGD3_BRAOL; Uncharacterized protein
STRING	Bo8g106640.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-144	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]