PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 287aa MW: 32067.5 Da PI: 10.1157 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 339.7 | 7.5e-104 | 9 | 287 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnklla 83 mdddg+ rn+gyyepa +s+k nlglqlm +i +r++k+ r+ nl ++++ +++++++ m++ +++++ +++k+++ XP_013600188.1 9 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHQhhpephMSY----NWINQ-------HKDKFFN 88 99**99..9******99899**************.9**************.99*****99999899888888....*****.......789**** PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkk.kkrqrakkpkekkakkkkkksekskkk 177 +l+v+++ p++ +vl++t+s s+++ +l++ +++++e++p++++++ ++ kk+k ++++ ++ +k+kk +k+k+++ ++ XP_013600188.1 89 MLPVTTT-----PNYGNVLPQTSSSPSMHM----NLHH------HHHQTEEHPVKCEPDIVESKKRKpNSKAGGAPTKAKKPRKPKEENG---DS 165 ***9986.....99************9999....3333......3344556677776666555444404445555667777777777332...23 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++++ +r+k kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL XP_013600188.1 166 NNANV--SRVKPAKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKL 258 33333..689************************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a++G++++ p+DLk+hWA+HGtnkfvtir XP_013600188.1 259 ASDGFNFGSPIDLKSHWARHGTNKFVTIR 287 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.1E-162 | 9 | 287 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.9E-95 | 9 | 287 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGPFCIFAMD DDGFRNWGYY EPAAATSFKG NLGLQLMPTI DRNTKPFLPG RDPNLMIGQT 60 GSYHHHQHHP EPHMSYNWIN QHKDKFFNML PVTTTPNYGN VLPQTSSSPS MHMNLHHHHH 120 QTEEHPVKCE PDIVESKKRK PNSKAGGAPT KAKKPRKPKE ENGDSNNANV SRVKPAKKSF 180 DLVINGVNMD ISGLPVPVCT CTGAPQQCYR WGCGGWQSAC CTTNISMHPL PMSTKRRGAR 240 ISGRKMSQGA FKKVLEKLAS DGFNFGSPID LKSHWARHGT NKFVTIR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600188.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 | ||||
Refseq | XP_013600189.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 | ||||
Refseq | XP_013707901.1 | 0.0 | protein BASIC PENTACYSTEINE2-like isoform X1 | ||||
Swissprot | Q9LDE2 | 1e-161 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A3P6GGD3 | 0.0 | A0A3P6GGD3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g106640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2893 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-144 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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