PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599954.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 90aa    MW: 10828.5 Da    PI: 10.076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12242451
             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                    +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  XP_013599954.1  2 RGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 42
                    9**96.5.7*********6.....6********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.361155IPR001471AP2/ERF domain
PfamPF008477.0E-7244IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-10245IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-9247IPR001471AP2/ERF domain
SMARTSM003801.4E-6257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MRGVYYKNMK WQAAIKVEKR QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEEKRDL  60
KQQSWEGFLA CTRRKITNKK PKRRMEPEEL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336907e-78AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599954.18e-62PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_013712291.12e-61ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_013719852.13e-60ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_013719853.13e-60ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022545528.13e-60ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022545529.13e-60ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-52ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A078HAS16e-59A0A078HAS1_BRANA; BnaA08g04940D protein
TrEMBLA0A078IHZ52e-60A0A078IHZ5_BRANA; BnaC08g08930D protein
TrEMBLA0A3P6BDE25e-59A0A3P6BDE2_BRACM; Uncharacterized protein
TrEMBLA0A3P6GB562e-60A0A3P6GB56_BRAOL; Uncharacterized protein
STRINGBo8g033910.11e-59(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-54ERF family protein