PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599913.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 315aa    MW: 35636.8 Da    PI: 7.2364
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.94.3e-3292147460
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHR+eve e
  XP_013599913.1  92 ITYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRKEVEGE 147
                     78*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2892144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2992154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-3193144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.43694143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.24E-19211279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-30212280IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-28218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEIESQEDHD MPIPLNTAFV GGGGGHGHMI HHHHDHHAAN SAPPTHNNNN NITTQPPQMP  60
LHGNGHGNNH DHRQHQDPHH VSYNAIIKKP IITYKECLKN HAAAMGGNAT DGCGEFMPSG  120
EDGSIEALTC SACNCHRNFH RKEVEGETAT TAISSFHQPP PPRKLMLNHH NIRSAMPHQM  180
IMPVGVSNYR YMHHSESDDF MEEDGVTTAS RPPPYNPKKR FRTKFTPEQK EKMLSFAEKV  240
GWKLQRQEDS VVQRFCEEIG VKRRVLKVWM HNNKLHFSKK DNSNNINLED NDNEKINNVN  300
NVDLSGNIDM TKIVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-232182741773ZF-HD homeobox family protein
1wh7_A3e-232192741873ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599913.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599913.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_013599915.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_013599916.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_013599917.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_013641416.20.0zinc-finger homeodomain protein 4
RefseqXP_022564110.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S00.0ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A0D3DXC90.0A0A0D3DXC9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G0580.0A0A3P6G058_BRAOL; Uncharacterized protein
STRINGBo8g106790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-140homeobox protein 31