PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 271aa MW: 30172.2 Da PI: 9.9172 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 340.4 | 4.6e-104 | 1 | 271 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalll 86 mdddg+ rn+gyyepa a++k nlglqlmss +r++k+ r+ nl ++++++++++ + m++ +++++ +++k++++l+ XP_013599843.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MIGQNGSYHHPEppihMSY----NWINQ-------QKDKFFNMLP 80 99**99..9*******999*************9.9**************.**********995555555....*****.......899******* PP GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181 v+ +p++ ++l++t+s+ s+++ +q+ed++v+ +eee +i++ ++ +k+k+++++ ++++k kk +k+k+ ++++k++ XP_013599843.1 81 VTA-----TPNYGNALPETSSAPSMHH---HQTEDDPVKCEEEE-----EIVQ--PN--KKRKPNSKAGTATTKGKKPRKPKE-----ENDSKTN 153 877.....59**********9997655...89999999966555.....4443..22..333344345566677777777777.....3344555 PP GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276 +r+k kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL+++G XP_013599843.1 154 V--SRVKPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLSSDG 246 5..689***************************************************************************************** PP GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301 ++++np+DLk+hWA+HGtnkfvtir XP_013599843.1 247 FNFGNPIDLKSHWARHGTNKFVTIR 271 ************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.3E-164 | 1 | 271 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.8E-94 | 1 | 271 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMSS ADRNTKPFLP GRDPNLMIGQ NGSYHHPEPP 60 IHMSYNWINQ QKDKFFNMLP VTATPNYGNA LPETSSAPSM HHHQTEDDPV KCEEEEEIVQ 120 PNKKRKPNSK AGTATTKGKK PRKPKEENDS KTNVSRVKPA KKSVDLVING VNMDISGLPV 180 PVCTCTGAPQ QCYRWGCGGW QSACCTTNIS MHPLPMSTKR RGARISGRKM SQGAFKKVLE 240 KLSSDGFNFG NPIDLKSHWA RHGTNKFVTI R |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599843.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_013599844.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9LDE2 | 1e-167 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A0D3DPQ3 | 0.0 | A0A0D3DPQ3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g066170.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2893 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-162 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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